Chryseobacterium oleae sp. nov., an efficient plant growth promoting bacterium in the rooting induction of olive tree (Olea europaea L.) cuttings and emended descriptions of the genus Chryseobacterium, C. daecheongense, C. gambrini, C. gleum, C. joostei, C. jejuense, C. luteum, C. shigense, C. taiwanense, C. ureilyticum and C. vrystaatense.
Identifieur interne : 000205 ( Main/Exploration ); précédent : 000204; suivant : 000206Chryseobacterium oleae sp. nov., an efficient plant growth promoting bacterium in the rooting induction of olive tree (Olea europaea L.) cuttings and emended descriptions of the genus Chryseobacterium, C. daecheongense, C. gambrini, C. gleum, C. joostei, C. jejuense, C. luteum, C. shigense, C. taiwanense, C. ureilyticum and C. vrystaatense.
Auteurs : Maria Del Carmen Montero-Calasanz [Espagne] ; Markus Göker [Allemagne] ; Manfred Rohde [Allemagne] ; Cathrin Spröer [Allemagne] ; Peter Schumann [Allemagne] ; Hans-Jürgen Busse [Autriche] ; Michael Schmid [Allemagne] ; Hans-Peter Klenk [Allemagne] ; Brian J. Tindall [Allemagne] ; Maria Camacho [Espagne]Source :
- Systematic and applied microbiology [ 1618-0984 ] ; 2014.
Descripteurs français
- KwdFr :
- ADN bactérien (composition chimique), ADN bactérien (génétique), ADN ribosomique (composition chimique), ADN ribosomique (génétique), ARN ribosomique 16S (génétique), Acides gras (analyse), Analyse de regroupements (MeSH), Analyse de séquence d'ADN (MeSH), Chlorure de sodium (métabolisme), Chryseobacterium (classification), Chryseobacterium (génétique), Chryseobacterium (isolement et purification), Composition en bases nucléiques (MeSH), Concentration en ions d'hydrogène (MeSH), Cytosol (composition chimique), Données de séquences moléculaires (MeSH), Développement des plantes (MeSH), Espagne (MeSH), Facteur de croissance végétal (métabolisme), Hybridation d'acides nucléiques (MeSH), Olea (microbiologie), Phospholipides (analyse), Phylogenèse (MeSH), Pigments biologiques (analyse), Racines de plante (croissance et développement), Spermidine (analyse), Techniques de typage bactérien (MeSH), Température (MeSH), Vitamine K2 (analyse).
- MESH :
- analyse : Acides gras, Phospholipides, Pigments biologiques, Spermidine, Vitamine K2.
- composition chimique : ADN bactérien, ADN ribosomique, Chryseobacterium, Cytosol.
- croissance et développement : Racines de plante.
- génétique : ADN bactérien, ADN ribosomique, ARN ribosomique 16S, Chryseobacterium.
- isolement et purification : Chryseobacterium.
- microbiologie : Olea.
- métabolisme : Chlorure de sodium, Facteur de croissance végétal.
- Analyse de regroupements, Analyse de séquence d'ADN, Composition en bases nucléiques, Concentration en ions d'hydrogène, Données de séquences moléculaires, Développement des plantes, Espagne, Hybridation d'acides nucléiques, Phylogenèse, Techniques de typage bactérien, Température.
- Wicri :
- geographic : Espagne.
English descriptors
- KwdEn :
- Bacterial Typing Techniques (MeSH), Base Composition (MeSH), Chryseobacterium (classification), Chryseobacterium (genetics), Chryseobacterium (isolation & purification), Cluster Analysis (MeSH), Cytosol (chemistry), DNA, Bacterial (chemistry), DNA, Bacterial (genetics), DNA, Ribosomal (chemistry), DNA, Ribosomal (genetics), Fatty Acids (analysis), Hydrogen-Ion Concentration (MeSH), Molecular Sequence Data (MeSH), Nucleic Acid Hybridization (MeSH), Olea (microbiology), Phospholipids (analysis), Phylogeny (MeSH), Pigments, Biological (analysis), Plant Development (MeSH), Plant Growth Regulators (metabolism), Plant Roots (growth & development), RNA, Ribosomal, 16S (genetics), Sequence Analysis, DNA (MeSH), Sodium Chloride (metabolism), Spain (MeSH), Spermidine (analysis), Temperature (MeSH), Vitamin K 2 (analysis).
- MESH :
- chemical , analysis : Fatty Acids, Phospholipids, Pigments, Biological, Spermidine, Vitamin K 2.
- chemical , chemistry : DNA, Bacterial, DNA, Ribosomal.
- geographic : Spain.
- chemistry : Cytosol.
- classification : Chryseobacterium.
- genetics : Chryseobacterium, DNA, Bacterial, DNA, Ribosomal, RNA, Ribosomal, 16S.
- growth & development : Plant Roots.
- isolation & purification : Chryseobacterium.
- chemical , metabolism : Plant Growth Regulators, Sodium Chloride.
- microbiology : Olea.
- Bacterial Typing Techniques, Base Composition, Cluster Analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Plant Development, Sequence Analysis, DNA, Temperature.
Abstract
A novel non-motile, Gram-staining-negative, yellow-pigmented bacterium, designated CT348(T), isolated from the ectorhizosphere of an organic olive tree in Spain and characterised as an efficient plant growth promoting bacterium, was investigated to determine its taxonomic status. The isolate grew best in a temperature range of 5-35°C, at pH 5.0-8.0 and with 0-1% (w/v) NaCl. Chemotaxonomic and molecular characteristics of the isolate matched those described for members of the genus Chryseobacterium. The DNA G+C content of the novel strain was 38.2mol%. The strain contained a polyamine pattern with sym-homospermidine as the major compound and produced flexirubin-type pigments. MK-6 was the dominant menaquinone and the major cellular fatty acids were iso-C15:0, C17:1ω9c, iso-C17:0 3-OH and iso-C15:0 2-OH. The main polar lipids were phosphatidylethanolamine and several unidentified lipids and aminolipids. The 16S rRNA gene showed 92.2-97.8% sequence identity with the members of the genus Chyseobacterium. Based on the phenotypic traits and DNA-DNA hybridizations with the type strains of the most closely related species, the isolate is shown to represent a novel species, Chyseobacterium oleae, type strain CT348(T) (=DSM 25575 =CCUG 63020). Emended descriptions of the genus Chryseobacterium and C. daecheongense, C. gambrini, C. gleum, C. joostei, C. jejuense, C. luteum, C. shigense, C. taiwanense, C. ureilyticum and C. vrystaatense are also proposed.
DOI: 10.1016/j.syapm.2014.04.004
PubMed: 24867808
Affiliations:
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German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig</wicri:regionArea><wicri:noRegion>38124 Braunschweig</wicri:noRegion><wicri:noRegion>38124 Braunschweig</wicri:noRegion><wicri:noRegion>38124 Braunschweig</wicri:noRegion></affiliation></author><author><name sortKey="Busse, Hans Jurgen" sort="Busse, Hans Jurgen" uniqKey="Busse H" first="Hans-Jürgen" last="Busse">Hans-Jürgen Busse</name><affiliation wicri:level="1"><nlm:affiliation>Institut für Bakteriologie, Mykologie und Hygiene, Veterinärmedizinische Universität, A-1210 Wien, Austria.</nlm:affiliation><country xml:lang="fr">Autriche</country><wicri:regionArea>Institut für Bakteriologie, Mykologie und Hygiene, Veterinärmedizinische Universität, A-1210 Wien</wicri:regionArea><wicri:noRegion>A-1210 Wien</wicri:noRegion></affiliation></author><author><name sortKey="Schmid, Michael" sort="Schmid, Michael" uniqKey="Schmid M" first="Michael" last="Schmid">Michael Schmid</name><affiliation wicri:level="1"><nlm:affiliation>Research Unit Microbe-Plant Interactions, Helmholtz Zentrum München, Ingolstädter Landstraße 1, 85764 Neuherberg, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Research Unit Microbe-Plant Interactions, Helmholtz Zentrum München, Ingolstädter Landstraße 1, 85764 Neuherberg</wicri:regionArea><wicri:noRegion>85764 Neuherberg</wicri:noRegion><wicri:noRegion>85764 Neuherberg</wicri:noRegion><wicri:noRegion>85764 Neuherberg</wicri:noRegion></affiliation></author><author><name sortKey="Klenk, Hans Peter" sort="Klenk, Hans Peter" uniqKey="Klenk H" first="Hans-Peter" last="Klenk">Hans-Peter Klenk</name><affiliation wicri:level="1"><nlm:affiliation>Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig</wicri:regionArea><wicri:noRegion>38124 Braunschweig</wicri:noRegion><wicri:noRegion>38124 Braunschweig</wicri:noRegion><wicri:noRegion>38124 Braunschweig</wicri:noRegion></affiliation></author><author><name sortKey="Tindall, Brian J" sort="Tindall, Brian J" uniqKey="Tindall B" first="Brian J" last="Tindall">Brian J. 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Electronic address: maria.montero-calasanz@dsmz.de.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig, Germany; IFAPA-Instituto de Investigación y Formación Agraria y Pesquera, Centro Las Torres-Tomejil, Ctra, Sevilla-Cazalla de la Sierra, Km 12.2, Alcalá del Río, 41200 Sevilla</wicri:regionArea><placeName><region nuts="2" type="communauté">Andalousie</region></placeName></affiliation></author><author><name sortKey="Goker, Markus" sort="Goker, Markus" uniqKey="Goker M" first="Markus" last="Göker">Markus Göker</name><affiliation wicri:level="1"><nlm:affiliation>Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig</wicri:regionArea><wicri:noRegion>38124 Braunschweig</wicri:noRegion><wicri:noRegion>38124 Braunschweig</wicri:noRegion><wicri:noRegion>38124 Braunschweig</wicri:noRegion></affiliation></author><author><name sortKey="Rohde, Manfred" sort="Rohde, Manfred" uniqKey="Rohde M" first="Manfred" last="Rohde">Manfred Rohde</name><affiliation wicri:level="1"><nlm:affiliation>HZI - Helmholtz Centre for Infection Research, Inhoffenstraße 7, 38124 Braunschweig, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>HZI - Helmholtz Centre for Infection Research, Inhoffenstraße 7, 38124 Braunschweig</wicri:regionArea><wicri:noRegion>38124 Braunschweig</wicri:noRegion><wicri:noRegion>38124 Braunschweig</wicri:noRegion><wicri:noRegion>38124 Braunschweig</wicri:noRegion></affiliation></author><author><name sortKey="Sproer, Cathrin" sort="Sproer, Cathrin" uniqKey="Sproer C" first="Cathrin" last="Spröer">Cathrin Spröer</name><affiliation wicri:level="1"><nlm:affiliation>Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig</wicri:regionArea><wicri:noRegion>38124 Braunschweig</wicri:noRegion><wicri:noRegion>38124 Braunschweig</wicri:noRegion><wicri:noRegion>38124 Braunschweig</wicri:noRegion></affiliation></author><author><name sortKey="Schumann, Peter" sort="Schumann, Peter" uniqKey="Schumann P" first="Peter" last="Schumann">Peter Schumann</name><affiliation wicri:level="1"><nlm:affiliation>Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig</wicri:regionArea><wicri:noRegion>38124 Braunschweig</wicri:noRegion><wicri:noRegion>38124 Braunschweig</wicri:noRegion><wicri:noRegion>38124 Braunschweig</wicri:noRegion></affiliation></author><author><name sortKey="Busse, Hans Jurgen" sort="Busse, Hans Jurgen" uniqKey="Busse H" first="Hans-Jürgen" last="Busse">Hans-Jürgen Busse</name><affiliation wicri:level="1"><nlm:affiliation>Institut für Bakteriologie, Mykologie und Hygiene, Veterinärmedizinische Universität, A-1210 Wien, Austria.</nlm:affiliation><country xml:lang="fr">Autriche</country><wicri:regionArea>Institut für Bakteriologie, Mykologie und Hygiene, Veterinärmedizinische Universität, A-1210 Wien</wicri:regionArea><wicri:noRegion>A-1210 Wien</wicri:noRegion></affiliation></author><author><name sortKey="Schmid, Michael" sort="Schmid, Michael" uniqKey="Schmid M" first="Michael" last="Schmid">Michael Schmid</name><affiliation wicri:level="1"><nlm:affiliation>Research Unit Microbe-Plant Interactions, Helmholtz Zentrum München, Ingolstädter Landstraße 1, 85764 Neuherberg, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Research Unit Microbe-Plant Interactions, Helmholtz Zentrum München, Ingolstädter Landstraße 1, 85764 Neuherberg</wicri:regionArea><wicri:noRegion>85764 Neuherberg</wicri:noRegion><wicri:noRegion>85764 Neuherberg</wicri:noRegion><wicri:noRegion>85764 Neuherberg</wicri:noRegion></affiliation></author><author><name sortKey="Klenk, Hans Peter" sort="Klenk, Hans Peter" uniqKey="Klenk H" first="Hans-Peter" last="Klenk">Hans-Peter Klenk</name><affiliation wicri:level="1"><nlm:affiliation>Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig</wicri:regionArea><wicri:noRegion>38124 Braunschweig</wicri:noRegion><wicri:noRegion>38124 Braunschweig</wicri:noRegion><wicri:noRegion>38124 Braunschweig</wicri:noRegion></affiliation></author><author><name sortKey="Tindall, Brian J" sort="Tindall, Brian J" uniqKey="Tindall B" first="Brian J" last="Tindall">Brian J. Tindall</name><affiliation wicri:level="1"><nlm:affiliation>Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig, Germany. Electronic address: bti@dsmz.de.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig</wicri:regionArea><wicri:noRegion>38124 Braunschweig</wicri:noRegion><wicri:noRegion>38124 Braunschweig</wicri:noRegion><wicri:noRegion>38124 Braunschweig</wicri:noRegion></affiliation></author><author><name sortKey="Camacho, Maria" sort="Camacho, Maria" uniqKey="Camacho M" first="Maria" last="Camacho">Maria Camacho</name><affiliation wicri:level="2"><nlm:affiliation>IFAPA-Instituto de Investigación y Formación Agraria y Pesquera, Centro Las Torres-Tomejil, Ctra, Sevilla-Cazalla de la Sierra, Km 12.2, Alcalá del Río, 41200 Sevilla, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>IFAPA-Instituto de Investigación y Formación Agraria y Pesquera, Centro Las Torres-Tomejil, Ctra, Sevilla-Cazalla de la Sierra, Km 12.2, Alcalá del Río, 41200 Sevilla</wicri:regionArea><placeName><region nuts="2" type="communauté">Andalousie</region></placeName></affiliation></author></analytic><series><title level="j">Systematic and applied microbiology</title><idno type="eISSN">1618-0984</idno><imprint><date when="2014" type="published">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Bacterial Typing Techniques (MeSH)</term><term>Base Composition (MeSH)</term><term>Chryseobacterium (classification)</term><term>Chryseobacterium (genetics)</term><term>Chryseobacterium (isolation & purification)</term><term>Cluster Analysis (MeSH)</term><term>Cytosol (chemistry)</term><term>DNA, Bacterial (chemistry)</term><term>DNA, Bacterial (genetics)</term><term>DNA, Ribosomal (chemistry)</term><term>DNA, Ribosomal (genetics)</term><term>Fatty Acids (analysis)</term><term>Hydrogen-Ion Concentration (MeSH)</term><term>Molecular Sequence Data (MeSH)</term><term>Nucleic Acid Hybridization (MeSH)</term><term>Olea (microbiology)</term><term>Phospholipids (analysis)</term><term>Phylogeny (MeSH)</term><term>Pigments, Biological (analysis)</term><term>Plant Development (MeSH)</term><term>Plant Growth Regulators (metabolism)</term><term>Plant Roots (growth & development)</term><term>RNA, Ribosomal, 16S (genetics)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Sodium Chloride (metabolism)</term><term>Spain (MeSH)</term><term>Spermidine (analysis)</term><term>Temperature (MeSH)</term><term>Vitamin K 2 (analysis)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN bactérien (composition chimique)</term><term>ADN bactérien (génétique)</term><term>ADN ribosomique (composition chimique)</term><term>ADN ribosomique (génétique)</term><term>ARN ribosomique 16S (génétique)</term><term>Acides gras (analyse)</term><term>Analyse de regroupements (MeSH)</term><term>Analyse de séquence d'ADN (MeSH)</term><term>Chlorure de sodium (métabolisme)</term><term>Chryseobacterium (classification)</term><term>Chryseobacterium (génétique)</term><term>Chryseobacterium (isolement et purification)</term><term>Composition en bases nucléiques (MeSH)</term><term>Concentration en ions d'hydrogène (MeSH)</term><term>Cytosol (composition chimique)</term><term>Données de séquences moléculaires (MeSH)</term><term>Développement des plantes (MeSH)</term><term>Espagne (MeSH)</term><term>Facteur de croissance végétal (métabolisme)</term><term>Hybridation d'acides nucléiques (MeSH)</term><term>Olea (microbiologie)</term><term>Phospholipides (analyse)</term><term>Phylogenèse (MeSH)</term><term>Pigments biologiques (analyse)</term><term>Racines de plante (croissance et développement)</term><term>Spermidine (analyse)</term><term>Techniques de typage bactérien (MeSH)</term><term>Température (MeSH)</term><term>Vitamine K2 (analyse)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>Fatty Acids</term><term>Phospholipids</term><term>Pigments, Biological</term><term>Spermidine</term><term>Vitamin K 2</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>DNA, Bacterial</term><term>DNA, Ribosomal</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Spain</term></keywords><keywords scheme="MESH" qualifier="analyse" xml:lang="fr"><term>Acides gras</term><term>Phospholipides</term><term>Pigments biologiques</term><term>Spermidine</term><term>Vitamine K2</term></keywords><keywords scheme="MESH" qualifier="chemistry" xml:lang="en"><term>Cytosol</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Chryseobacterium</term></keywords><keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>ADN bactérien</term><term>ADN ribosomique</term><term>Chryseobacterium</term><term>Cytosol</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Racines de plante</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Chryseobacterium</term><term>DNA, Bacterial</term><term>DNA, Ribosomal</term><term>RNA, Ribosomal, 16S</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Plant Roots</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN bactérien</term><term>ADN ribosomique</term><term>ARN ribosomique 16S</term><term>Chryseobacterium</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Chryseobacterium</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Chryseobacterium</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Plant Growth Regulators</term><term>Sodium Chloride</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Olea</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Olea</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Chlorure de sodium</term><term>Facteur de croissance végétal</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Bacterial Typing Techniques</term><term>Base Composition</term><term>Cluster Analysis</term><term>Hydrogen-Ion Concentration</term><term>Molecular Sequence Data</term><term>Nucleic Acid Hybridization</term><term>Phylogeny</term><term>Plant Development</term><term>Sequence Analysis, DNA</term><term>Temperature</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de regroupements</term><term>Analyse de séquence d'ADN</term><term>Composition en bases nucléiques</term><term>Concentration en ions d'hydrogène</term><term>Données de séquences moléculaires</term><term>Développement des plantes</term><term>Espagne</term><term>Hybridation d'acides nucléiques</term><term>Phylogenèse</term><term>Techniques de typage bactérien</term><term>Température</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Espagne</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">A novel non-motile, Gram-staining-negative, yellow-pigmented bacterium, designated CT348(T), isolated from the ectorhizosphere of an organic olive tree in Spain and characterised as an efficient plant growth promoting bacterium, was investigated to determine its taxonomic status. The isolate grew best in a temperature range of 5-35°C, at pH 5.0-8.0 and with 0-1% (w/v) NaCl. Chemotaxonomic and molecular characteristics of the isolate matched those described for members of the genus Chryseobacterium. The DNA G+C content of the novel strain was 38.2mol%. The strain contained a polyamine pattern with sym-homospermidine as the major compound and produced flexirubin-type pigments. MK-6 was the dominant menaquinone and the major cellular fatty acids were iso-C15:0, C17:1ω9c, iso-C17:0 3-OH and iso-C15:0 2-OH. The main polar lipids were phosphatidylethanolamine and several unidentified lipids and aminolipids. The 16S rRNA gene showed 92.2-97.8% sequence identity with the members of the genus Chyseobacterium. Based on the phenotypic traits and DNA-DNA hybridizations with the type strains of the most closely related species, the isolate is shown to represent a novel species, Chyseobacterium oleae, type strain CT348(T) (=DSM 25575 =CCUG 63020). Emended descriptions of the genus Chryseobacterium and C. daecheongense, C. gambrini, C. gleum, C. joostei, C. jejuense, C. luteum, C. shigense, C. taiwanense, C. ureilyticum and C. vrystaatense are also proposed.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">24867808</PMID><DateCompleted><Year>2015</Year><Month>02</Month><Day>19</Day></DateCompleted><DateRevised><Year>2015</Year><Month>11</Month><Day>19</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1618-0984</ISSN><JournalIssue CitedMedium="Internet"><Volume>37</Volume><Issue>5</Issue><PubDate><Year>2014</Year><Month>Jul</Month></PubDate></JournalIssue><Title>Systematic and applied microbiology</Title><ISOAbbreviation>Syst Appl Microbiol</ISOAbbreviation></Journal><ArticleTitle>Chryseobacterium oleae sp. nov., an efficient plant growth promoting bacterium in the rooting induction of olive tree (Olea europaea L.) cuttings and emended descriptions of the genus Chryseobacterium, C. daecheongense, C. gambrini, C. gleum, C. joostei, C. jejuense, C. luteum, C. shigense, C. taiwanense, C. ureilyticum and C. vrystaatense.</ArticleTitle><Pagination><MedlinePgn>342-50</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.syapm.2014.04.004</ELocationID><ELocationID EIdType="pii" ValidYN="Y">S0723-2020(14)00060-5</ELocationID><Abstract><AbstractText>A novel non-motile, Gram-staining-negative, yellow-pigmented bacterium, designated CT348(T), isolated from the ectorhizosphere of an organic olive tree in Spain and characterised as an efficient plant growth promoting bacterium, was investigated to determine its taxonomic status. The isolate grew best in a temperature range of 5-35°C, at pH 5.0-8.0 and with 0-1% (w/v) NaCl. Chemotaxonomic and molecular characteristics of the isolate matched those described for members of the genus Chryseobacterium. The DNA G+C content of the novel strain was 38.2mol%. The strain contained a polyamine pattern with sym-homospermidine as the major compound and produced flexirubin-type pigments. MK-6 was the dominant menaquinone and the major cellular fatty acids were iso-C15:0, C17:1ω9c, iso-C17:0 3-OH and iso-C15:0 2-OH. The main polar lipids were phosphatidylethanolamine and several unidentified lipids and aminolipids. The 16S rRNA gene showed 92.2-97.8% sequence identity with the members of the genus Chyseobacterium. Based on the phenotypic traits and DNA-DNA hybridizations with the type strains of the most closely related species, the isolate is shown to represent a novel species, Chyseobacterium oleae, type strain CT348(T) (=DSM 25575 =CCUG 63020). Emended descriptions of the genus Chryseobacterium and C. daecheongense, C. gambrini, C. gleum, C. joostei, C. jejuense, C. luteum, C. shigense, C. taiwanense, C. ureilyticum and C. vrystaatense are also proposed.</AbstractText><CopyrightInformation>Copyright © 2014 Elsevier GmbH. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Montero-Calasanz</LastName><ForeName>Maria del Carmen</ForeName><Initials>Mdel C</Initials><AffiliationInfo><Affiliation>Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig, Germany; IFAPA-Instituto de Investigación y Formación Agraria y Pesquera, Centro Las Torres-Tomejil, Ctra, Sevilla-Cazalla de la Sierra, Km 12.2, Alcalá del Río, 41200 Sevilla, Spain. Electronic address: maria.montero-calasanz@dsmz.de.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Göker</LastName><ForeName>Markus</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rohde</LastName><ForeName>Manfred</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>HZI - Helmholtz Centre for Infection Research, Inhoffenstraße 7, 38124 Braunschweig, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Spröer</LastName><ForeName>Cathrin</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Schumann</LastName><ForeName>Peter</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Busse</LastName><ForeName>Hans-Jürgen</ForeName><Initials>HJ</Initials><AffiliationInfo><Affiliation>Institut für Bakteriologie, Mykologie und Hygiene, Veterinärmedizinische Universität, A-1210 Wien, Austria.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Schmid</LastName><ForeName>Michael</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Research Unit Microbe-Plant Interactions, Helmholtz Zentrum München, Ingolstädter Landstraße 1, 85764 Neuherberg, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Klenk</LastName><ForeName>Hans-Peter</ForeName><Initials>HP</Initials><AffiliationInfo><Affiliation>Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tindall</LastName><ForeName>Brian J</ForeName><Initials>BJ</Initials><AffiliationInfo><Affiliation>Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Inhoffenstraße 7B, 38124 Braunschweig, Germany. Electronic address: bti@dsmz.de.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Camacho</LastName><ForeName>Maria</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>IFAPA-Instituto de Investigación y Formación Agraria y Pesquera, Centro Las Torres-Tomejil, Ctra, Sevilla-Cazalla de la Sierra, Km 12.2, Alcalá del Río, 41200 Sevilla, Spain.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName><AccessionNumberList><AccessionNumber>EU336939</AccessionNumber></AccessionNumberList></DataBank></DataBankList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2014</Year><Month>05</Month><Day>24</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Syst Appl Microbiol</MedlineTA><NlmUniqueID>8306133</NlmUniqueID><ISSNLinking>0723-2020</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004275">DNA, Ribosomal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005227">Fatty Acids</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010743">Phospholipids</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010860">Pigments, Biological</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010937">Plant Growth Regulators</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance></Chemical><Chemical><RegistryNumber>11032-49-8</RegistryNumber><NameOfSubstance UI="D024482">Vitamin K 2</NameOfSubstance></Chemical><Chemical><RegistryNumber>451W47IQ8X</RegistryNumber><NameOfSubstance UI="D012965">Sodium Chloride</NameOfSubstance></Chemical><Chemical><RegistryNumber>U87FK77H25</RegistryNumber><NameOfSubstance UI="D013095">Spermidine</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D015373" MajorTopicYN="N">Bacterial Typing Techniques</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001482" MajorTopicYN="N">Base Composition</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D045247" MajorTopicYN="N">Chryseobacterium</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016000" MajorTopicYN="N">Cluster Analysis</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D003600" MajorTopicYN="N">Cytosol</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004275" MajorTopicYN="N">DNA, Ribosomal</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005227" MajorTopicYN="N">Fatty Acids</DescriptorName><QualifierName UI="Q000032" MajorTopicYN="N">analysis</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D006863" MajorTopicYN="N">Hydrogen-Ion Concentration</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009693" MajorTopicYN="N">Nucleic Acid Hybridization</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D031658" MajorTopicYN="N">Olea</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010743" MajorTopicYN="N">Phospholipids</DescriptorName><QualifierName UI="Q000032" MajorTopicYN="N">analysis</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010860" MajorTopicYN="N">Pigments, Biological</DescriptorName><QualifierName UI="Q000032" MajorTopicYN="N">analysis</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D063245" MajorTopicYN="N">Plant Development</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010937" MajorTopicYN="N">Plant Growth Regulators</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018517" MajorTopicYN="N">Plant Roots</DescriptorName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012965" MajorTopicYN="N">Sodium Chloride</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013030" MajorTopicYN="N" Type="Geographic">Spain</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013095" MajorTopicYN="N">Spermidine</DescriptorName><QualifierName UI="Q000032" MajorTopicYN="N">analysis</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013696" MajorTopicYN="N">Temperature</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D024482" MajorTopicYN="N">Vitamin K 2</DescriptorName><QualifierName UI="Q000032" MajorTopicYN="N">analysis</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Bacteriodetes</Keyword><Keyword MajorTopicYN="N">Flavobacteriaceae</Keyword><Keyword MajorTopicYN="N">Indole-3-acetic acid</Keyword><Keyword MajorTopicYN="N">PGPB</Keyword><Keyword MajorTopicYN="N">Taxonomy</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2013</Year><Month>11</Month><Day>05</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2014</Year><Month>02</Month><Day>21</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2014</Year><Month>04</Month><Day>22</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2014</Year><Month>5</Month><Day>29</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2014</Year><Month>5</Month><Day>29</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2015</Year><Month>2</Month><Day>20</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">24867808</ArticleId><ArticleId IdType="pii">S0723-2020(14)00060-5</ArticleId><ArticleId IdType="doi">10.1016/j.syapm.2014.04.004</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Allemagne</li><li>Autriche</li><li>Espagne</li></country><region><li>Andalousie</li></region></list><tree><country name="Espagne"><region name="Andalousie"><name sortKey="Montero Calasanz, Maria Del Carmen" sort="Montero Calasanz, Maria Del Carmen" uniqKey="Montero Calasanz M" first="Maria Del Carmen" last="Montero-Calasanz">Maria Del Carmen Montero-Calasanz</name></region><name sortKey="Camacho, Maria" sort="Camacho, Maria" uniqKey="Camacho M" first="Maria" last="Camacho">Maria Camacho</name></country><country name="Allemagne"><noRegion><name sortKey="Goker, Markus" sort="Goker, Markus" uniqKey="Goker M" first="Markus" last="Göker">Markus Göker</name></noRegion><name sortKey="Klenk, Hans Peter" sort="Klenk, Hans Peter" uniqKey="Klenk H" first="Hans-Peter" last="Klenk">Hans-Peter Klenk</name><name sortKey="Rohde, Manfred" sort="Rohde, Manfred" uniqKey="Rohde M" first="Manfred" last="Rohde">Manfred Rohde</name><name sortKey="Schmid, Michael" sort="Schmid, Michael" uniqKey="Schmid M" first="Michael" last="Schmid">Michael Schmid</name><name sortKey="Schumann, Peter" sort="Schumann, Peter" uniqKey="Schumann P" first="Peter" last="Schumann">Peter Schumann</name><name sortKey="Sproer, Cathrin" sort="Sproer, Cathrin" uniqKey="Sproer C" first="Cathrin" last="Spröer">Cathrin Spröer</name><name sortKey="Tindall, Brian J" sort="Tindall, Brian J" uniqKey="Tindall B" first="Brian J" last="Tindall">Brian J. Tindall</name></country><country name="Autriche"><noRegion><name sortKey="Busse, Hans Jurgen" sort="Busse, Hans Jurgen" uniqKey="Busse H" first="Hans-Jürgen" last="Busse">Hans-Jürgen Busse</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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